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This report was generated automatically by phylogenize (Bradley and Pollard, submitted: https://phylogenize.org), with the following parameters:

  • Type of input data: “16S”
  • Phenotype calculated: “prevalence”
  • Environment of interest: “Stool”
  • Prior probabilities for environments: “uninformative”

Phenotype calculation

Below, trees for all phyla with at least 5 representatives in the input data are presented. Trees are colored according to the phenotype chosen (here, prevalence in the environment Stool).

For prevalence, the tree is colored black (low prevalence) to orange (high prevalence). For specificity, the tree is colored red for taxa that are specific for an environment, blue for taxa that are specific for other environments (i.e., found less often in the environment chosen), and gray for taxa that are neither.

Phenotype mapped across trees

All taxa

Clostridiaceae_bacterium_60908 (prevalence = 0.613%) Clostridiales_bacterium_58120 (prevalence = 0.613%) Clostridiales_bacterium_52743 (prevalence = 4.29%) Clostridium_spiroforme_61500 (prevalence = 6.13%) Erysipelotrichaceae_bacterium_59516 (prevalence = 0.613%) Coprobacillus_sp_47700 (prevalence = 1.84%) Catenibacterium_mitsuokai_61547 (prevalence = 3.07%) Kandleria_vitulina_54464 (prevalence = 0.613%) Eggerthia_catenaformis_62698 (prevalence = 0.613%) Sharpea_azabuensis_60459 (prevalence = 0.613%) Erysipelothrix_rhusiopathiae_56338 (prevalence = 0.613%) Erysipelothrix_tonsillarum_58836 (prevalence = 0.613%) Allobaculum_stercoricanis_58449 (prevalence = 0.613%) Firmicutes_bacterium_59686 (prevalence = 0.613%) Streptococcus_pleomorphus_59089 (prevalence = 0.613%) Eubacterium_cylindroides_56237 (prevalence = 0.613%) Eubacterium_biforme_61684 (prevalence = 4.29%) Clostridiaceae_bacterium_58376 (prevalence = 0.613%) Clostridiales_bacterium_59662 (prevalence = 0.613%) Eubacterium_dolichum_61501 (prevalence = 0.613%) Erysipelotrichaceae_bacterium_55770 (prevalence = 2.45%) Erysipelotrichaceae_bacterium_62051 (prevalence = 0.613%) Erysipelotrichaceae_bacterium_56596 (prevalence = 1.23%) Holdemania_sp_59514 (prevalence = 0.613%) Holdemania_filiformis_61753 (prevalence = 1.84%) Bulleidia_extructa_62099 (prevalence = 0.613%) Solobacterium_moorei_56880 (prevalence = 0.613%) Erysipelotrichaceae_bacterium_62396 (prevalence = 0.613%) Thermodesulfobium_narugense_62235 (prevalence = 0.613%) Coprothermobacter_proteolyticus_61171 (prevalence = 0.613%) Coprothermobacter_platensis_59804 (prevalence = 0.613%) Anaerovibrio_sp_59434 (prevalence = 0.613%) Anaerovibrio_lipolyticus_62322 (prevalence = 0.613%) Anaerovibrio_lipolyticus_60416 (prevalence = 0.613%) Selenomonas_sp_62699 (prevalence = 0.613%) Selenomonas_artemidis_57866 (prevalence = 0.613%) Selenomonas_flueggei_61981 (prevalence = 0.613%) Selenomonas_sp_62361 (prevalence = 0.613%) Selenomonas_noxia_56778 (prevalence = 0.613%) Selenomonas_sp_60104 (prevalence = 0.613%) Centipeda_periodontii_62449 (prevalence = 0.613%) Selenomonas_infelix_62103 (prevalence = 0.613%) Selenomonas_sp_59164 (prevalence = 0.613%) Selenomonas_sp_62584 (prevalence = 0.613%) Selenomonas_ruminantium_60344 (prevalence = 0.613%) Selenomonas_sp_60435 (prevalence = 0.613%) Selenomonas_sp_60703 (prevalence = 0.613%) Selenomonas_ruminantium_58283 (prevalence = 0.613%) Selenomonas_ruminantium_59914 (prevalence = 0.613%) Mitsuokella_sp_60102 (prevalence = 0.613%) Mitsuokella_multacida_61656 (prevalence = 0.613%) Mitsuokella_jalaludinii_60453 (prevalence = 0.613%) Selenomonas_bovis_57869 (prevalence = 0.613%) Selenomonas_sputigena_45411 (prevalence = 0.613%) Selenomonas_sp_62580 (prevalence = 0.613%) Megamonas_hypermegale_58935 (prevalence = 0.613%) Megamonas_hypermegale_57114 (prevalence = 1.23%) Anaeromusa_acidaminophila_56214 (prevalence = 0.613%) Thermosinus_carboxydivorans_61457 (prevalence = 0.613%) Sporomusa_ovata_44718 (prevalence = 0.613%) Pelosinus_sp_61624 (prevalence = 0.613%) Pelosinus_fermentans_51468 (prevalence = 0.613%) Pelosinus_fermentans_59409 (prevalence = 0.613%) Acetonema_longum_58333 (prevalence = 0.613%) Megasphaera_sp_58602 (prevalence = 0.613%) Megasphaera_micronuciformis_62167 (prevalence = 0.613%) Anaeroglobus_geminatus_62348 (prevalence = 0.613%) Megasphaera_sp_59658 (prevalence = 1.84%) Megasphaera_elsdenii_56779 (prevalence = 0.613%) Megasphaera_sp_50408 (prevalence = 0.613%) Megasphaera_sp_58302 (prevalence = 0.613%) Megasphaera_genomosp_55017 (prevalence = 0.613%) Veillonella_sp_62611 (prevalence = 0.613%) Veillonella_magna_59123 (prevalence = 0.613%) Veillonella_ratti_62429 (prevalence = 0.613%) Veillonella_montpellierensis_56010 (prevalence = 0.613%) Veillonella_atypica_58169 (prevalence = 1.23%) Veillonella_sp_62586 (prevalence = 0.613%) Veillonella_dispar_61763 (prevalence = 1.23%) Veillonella_parvula_58184 (prevalence = 0.613%) Veillonella_parvula_57794 (prevalence = 3.68%) Veillonella_sp_62404 (prevalence = 2.45%) Negativicoccus_succinicivorans_57482 (prevalence = 0.613%) Dialister_micraerophilus_56703 (prevalence = 0.613%) Dialister_invisus_61905 (prevalence = 27.6%) Dialister_succinatiphilus_62213 (prevalence = 2.45%) Succinispira_mobilis_58474 (prevalence = 0.613%) Acidaminococcus_intestini_54097 (prevalence = 8.59%) Acidaminococcus_fermentans_61896 (prevalence = 0.613%) Phascolarctobacterium_succinatutens_61948 (prevalence = 3.68%) Phascolarctobacterium_succinatutens_59819 (prevalence = 0.613%) Phascolarctobacterium_sp_59818 (prevalence = 0.613%) Phascolarctobacterium_sp_59817 (prevalence = 0.613%) Desmospora_sp_62690 (prevalence = 0.613%) Shimazuella_kribbensis_59054 (prevalence = 0.613%) Thermoactinomyces_sp_60828 (prevalence = 0.613%) Laceyella_sacchari_60174 (prevalence = 0.613%) Thermoactinomyces_daqus_60118 (prevalence = 0.613%) Cohnella_thermotolerans_58763 (prevalence = 0.613%) Cohnella_laeviribosi_58762 (prevalence = 0.613%) Cohnella_panacarvi_62635 (prevalence = 0.613%) Cohnella_sp_60917 (prevalence = 0.613%) Paenibacillus_harenae_58978 (prevalence = 0.613%) Paenibacillus_sp_61252 (prevalence = 0.613%) Paenibacillus_sp_59754 (prevalence = 0.613%) Paenibacillus_curdlanolyticus_62195 (prevalence = 0.613%) Paenibacillus_pasadenensis_58979 (prevalence = 0.613%) Paenibacillus_sp_61622 (prevalence = 0.613%) Paenibacillus_darwinianus_50249 (prevalence = 0.613%)